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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs9817239 chr3:125738463 A/G ROPN1 chr3:123687368-123711025:- -0.34 -5.93 5.87E-9 Box Plot
THCA rs9822473 chr3:179569232 C/G PHF11 chr13:50069746-50103123:+ -0.23 -6.34 5.29E-10 Box Plot
THCA rs9837077 chr3:125777661 A/G ROPN1 chr3:123687368-123711025:- 0.33 5.92 6.25E-9 Box Plot
THCA rs9837548 chr3:90156142 C/T STX19 chr3:93733213-93747454:- 0.41 6.09 2.39E-9 Box Plot
THCA rs9838264 chr3:90351314 A/T STX19 chr3:93733213-93747454:- 0.43 6.29 7.1E-10 Box Plot
THCA rs9848043 chr3:125749649 A/G ROPN1 chr3:123687368-123711025:- -0.34 -5.96 4.87E-9 Box Plot
THCA rs9851877 chr3:90258929 A/G STX19 chr3:93733213-93747454:- -0.42 -6.32 6.11E-10 Box Plot
THCA rs9856545 chr3:90402558 C/A STX19 chr3:93733213-93747454:- 0.46 6.7 5.84E-11 Box Plot
THCA rs9856640 chr3:125689427 T/A ROPN1 chr3:123687368-123711025:- -0.35 -6.3 6.61E-10 Box Plot
THCA rs9857806 chr3:90189355 G/A STX19 chr3:93733213-93747454:- 0.41 6.05 2.86E-9 Box Plot
THCA rs9860397 chr3:125790530 T/C ROPN1 chr3:123687368-123711025:- 0.33 6.1 2.2E-9 Box Plot
THCA rs9869721 chr3:125776614 G/A ROPN1 chr3:123687368-123711025:- 0.33 5.92 6.25E-9 Box Plot
THCA rs9875224 chr3:125777695 G/A ROPN1 chr3:123687368-123711025:- 0.33 5.92 6.25E-9 Box Plot
THCA rs9877921 chr3:90108491 A/G STX19 chr3:93733213-93747454:- -0.41 -6.01 3.59E-9 Box Plot
THCA rs9882998 chr3:61401112 C/T CPNE6 chr14:24540046-24547309:+ -0.63 -6.09 2.37E-9 Box Plot